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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 80DNA binding
  • 66DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 43transcription factor
  • 28control
  • 12recombinant protein
  • 9histone
  • 9histone modification
  • 7broad histone mark
  • 2narrow histone mark
  • 1RNA binding protein
  • 1chromatin remodeller
Date released
  • 53November, 2017
  • December, 2017
  • 39May, 2022
  • 21August, 2017
  • 16February, 2021
  • 10January, 2019
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 118fastq
  • 96bam
  • 72bigWig
  • 54bed narrowPeak
  • 49bigBed narrowPeak
  • 40zippedFastqFolder
  • 5bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 158Homo sapiens
Biosample type
  • 64cell line
  • 64primary cell
  • 22tissue
  • 7in vitro differentiated cells
  • 1stem cell
Organ
  • 70liver
  • 55pancreas
  • 47epithelium
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 2adipose tissue
  • 1brain
  • 1embryo
Project
  • 102AMP
  • 56HPAP
Genome assembly (visualization)
  • 66hg19
  • 61GRCh38
  • 5hg18
Lab
  • 101AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
Audit category:
  • 2missing controlled_by
Audit category:
  • 9inconsistent control read length
month_released!
  • December, 2017
BIOSAMPLE
ASSAY

158 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
tissue
liver11
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
adipocyte3
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
stem cell
hESC1
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