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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 49ATAC-seq
  • 29ChIP-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 1FAIRE-seq
  • 1single cell RNA-seq
Assay category
  • 66DNA accessibility
  • 29DNA binding
  • 1Transcription
Target of assay
  • 12transcription factor
  • 11histone
  • 11histone modification
  • 8broad histone mark
  • 6control
  • 3narrow histone mark
  • 1RNA binding protein
  • 1chromatin remodeller
Date released
  • 39May, 2022
  • 16February, 2021
  • 14August, 2017
  • 13December, 2017
  • 5January, 2018
  • 5January, 2019
  • 5September, 2017
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 61fastq
  • 40bam
  • 40zippedFastqFolder
  • 38bigWig
  • 30bed narrowPeak
  • 15bigBed narrowPeak
  • 11bed bed3+
  • 1bed broadPeak
Organism
  • 101Homo sapiens
Biosample type
  • 64primary cell
  • 18in vitro differentiated cells
  • 11tissue
  • 5cell line
  • 3stem cell
Organ
  • liver
  • 55pancreas
  • 48epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 2adipose tissue
  • 1brain
Project
  • 56HPAP
  • 45AMP
Genome assembly (visualization)
  • 32GRCh38
  • 32hg19
  • 5hg18
Lab
  • 56Klaus Kaestner, Upenn
  • 44AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 17inconsistent control read length
organ_slims!
  • liver
BIOSAMPLE
ASSAY

101 results

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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
GRO-seq
FAIRE-seq
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
tissue
pancreas41
islet of Langerhans12
white adipose tissue2
cerebellum (Hemisphere)1
cell line
GM128785
stem cell
hESC21
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