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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
16
snATAC-seq
5
GRO-seq
5
total RNA-seq
1
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
122
DNA binding
17
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
75
transcription factor
37
control
12
recombinant protein
10
histone
10
histone modification
9
broad histone mark
3
chromatin remodeller
1
RNA binding protein
1
narrow histone mark
Date released
53
November, 2017
48
December, 2017
16
February, 2021
12
August, 2017
10
January, 2019
5
January, 2018
4
November, 2018
1
December, 2018
1
October, 2017
1
September, 2020
Available data
150
fastq
128
bam
96
bigWig
78
bed narrowPeak
63
bigBed narrowPeak
11
bed bed3+
5
tsv
4
bed broadPeak
4
bigBed broadPeak
1
zippedFastqFolder
Organism
151
Homo sapiens
Biosample type
64
cell line
49
tissue
18
in vitro differentiated cells
17
primary cell
3
stem cell
Organ
105
liver
pancreas
48
epithelium
6
embryo
5
blood
5
bodily fluid
5
connective tissue
2
adipose tissue
1
brain
Project
134
AMP
17
HPAP
Genome assembly (visualization)
90
hg19
86
GRCh38
5
hg18
Lab
134
AMP-T2D consortium
17
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
16
audit script error
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
15
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
snATAC-seq
GRO-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
cell line
HepG2
53
5
1
GM12878
5
tissue
liver
46
white adipose tissue
2
cerebellum (Hemisphere)
1
in vitro differentiated cells
pancreatic endoderm
4
1
Posterior foregut
2
1
adipocyte
3
definitive endodermal cell
2
1
primitive gut cell
2
1
+ See 1 more…
primary cell
Langerhans cell
16
1
stem cell
hESC
2
1
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