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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122ChIP-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1ATAC-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 122DNA binding
  • 17DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 75transcription factor
  • 37control
  • 12recombinant protein
  • 10histone
  • 10histone modification
  • 9broad histone mark
  • 3chromatin remodeller
  • 1RNA binding protein
  • 1narrow histone mark
Date released
  • 53November, 2017
  • 48December, 2017
  • 16February, 2021
  • 12August, 2017
  • 10January, 2019
  • 5January, 2018
  • 4November, 2018
  • 1December, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 150fastq
  • 128bam
  • 96bigWig
  • 78bed narrowPeak
  • 63bigBed narrowPeak
  • 11bed bed3+
  • 5tsv
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 1zippedFastqFolder
Organism
  • 151Homo sapiens
Biosample type
  • 64cell line
  • 49tissue
  • 18in vitro differentiated cells
  • 17primary cell
  • 3stem cell
Organ
  • 105liver
  • pancreas
  • 48epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 2adipose tissue
  • 1brain
Project
  • 134AMP
  • 17HPAP
Genome assembly (visualization)
  • 90hg19
  • 86GRCh38
  • 5hg18
Lab
  • 134AMP-T2D consortium
  • 17Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 15inconsistent control read length
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

151 results

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Clear Filters
ChIP-seq
snATAC-seq
GRO-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
tissue
liver46
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
primary cell
Langerhans cell161
stem cell
hESC21
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