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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 48ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 123DNA binding
  • 64DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 70transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 48December, 2017
  • 39May, 2022
  • 16August, 2017
  • 16February, 2021
  • 10January, 2019
  • 5January, 2018
  • 5September, 2017
  • 4November, 2018
  • 1December, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 159fastq
  • 137bam
  • 104bigWig
  • 88bed narrowPeak
  • 75bigBed narrowPeak
  • 40zippedFastqFolder
  • 6bed bed3+
  • 5tsv
  • 4bed broadPeak
  • 4bigBed broadPeak
Organism
  • 199Homo sapiens
Biosample type
  • 64cell line
  • 64primary cell
  • 53tissue
  • 15in vitro differentiated cells
  • 3stem cell
Organ
  • 105liver
  • 53pancreas
  • 48epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 1brain
Project
  • 143AMP
  • 56HPAP
Genome assembly (visualization)
  • 98hg19
  • 94GRCh38
  • 5hg18
Lab
  • 143AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 16inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

199 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
tissue
liver46
pancreas4
islet of Langerhans2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
definitive endodermal cell21
primitive gut cell21
Hepatic endoderm1
stem cell
hESC21
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