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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 56ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 1FAIRE-seq
  • 1single cell RNA-seq
Assay category
  • 66DNA accessibility
  • 56DNA binding
  • 1Transcription
Target of assay
  • 36control
  • 11transcription factor
  • 9histone
  • 9histone modification
  • 7broad histone mark
  • 2narrow histone mark
Date released
  • 39May, 2022
  • 21August, 2017
  • 21November, 2017
  • 16February, 2021
  • 15December, 2017
  • 5January, 2018
  • 5September, 2017
  • 2January, 2019
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 88fastq
  • 67bam
  • 40zippedFastqFolder
  • 35bigWig
  • 27bed narrowPeak
  • 17bigBed narrowPeak
  • 5bed bed3+
  • 1bed broadPeak
Organism
  • 128Homo sapiens
Biosample type
  • 64primary cell
  • 26tissue
  • 23cell line
  • 14in vitro differentiated cells
  • 1stem cell
Organ
  • 55pancreas
  • 48epithelium
  • 36liver
  • 5connective tissue
  • 5embryo
  • 2adipose tissue
  • 2blood
  • 2bodily fluid
  • 1brain
Project
  • 72AMP
  • 56HPAP
Genome assembly (visualization)
  • 29GRCh38
  • 29hg19
  • 5hg18
Lab
  • 71AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 11inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

128 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
FAIRE-seq
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
tissue
liver15
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
cell line
HepG221
GM128782
in vitro differentiated cells
pancreatic endoderm31
adipocyte3
Posterior foregut11
definitive endodermal cell11
primitive gut cell11
stem cell
hESC1
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