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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
5
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
77
DNA binding
5
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
69
transcription factor
12
recombinant protein
6
histone
6
histone modification
5
broad histone mark
3
chromatin remodeller
2
control
1
RNA binding protein
1
narrow histone mark
Date released
33
December, 2017
32
November, 2017
8
January, 2019
5
August, 2017
5
November, 2018
1
December, 2018
1
March, 2019
Available data
85
fastq
84
bam
81
bigWig
69
bed narrowPeak
60
bigBed narrowPeak
11
bed bed3+
5
bed broadPeak
5
tsv
4
bigBed broadPeak
Organism
85
Homo sapiens
Biosample type
41
cell line
35
tissue
7
in vitro differentiated cells
2
stem cell
Organ
69
liver
5
connective tissue
3
blood
3
bodily fluid
2
adipose tissue
2
pancreas
1
embryo
Project
85
AMP
Genome assembly (visualization)
81
hg19
75
GRCh38
Lab
84
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
replication_type!
unreplicated
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
cell line
HepG2
32
5
1
GM12878
3
tissue
liver
31
white adipose tissue
2
islet of Langerhans
1
pancreas
1
in vitro differentiated cells
adipocyte
3
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
2
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