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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
5
total RNA-seq
1
Hi-C
Assay category
72
DNA binding
5
Transcription
1
3D chromatin structure
Target of assay
64
transcription factor
12
recombinant protein
6
histone
6
histone modification
5
broad histone mark
3
chromatin remodeller
2
control
1
RNA binding protein
1
narrow histone mark
Date released
33
December, 2017
32
November, 2017
8
January, 2019
4
November, 2018
1
December, 2018
Available data
78
fastq
77
bam
75
bigWig
65
bed narrowPeak
59
bigBed narrowPeak
6
bed bed3+
5
tsv
4
bed broadPeak
4
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
41
cell line
31
tissue
4
in vitro differentiated cells
2
stem cell
Organ
69
liver
3
blood
3
bodily fluid
1
embryo
Project
78
AMP
Genome assembly (visualization)
75
hg19
70
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
8
inconsistent control read length
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
32
5
1
GM12878
3
tissue
liver
31
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
2
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