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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 51ChIP-seq
  • 48ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 1single cell RNA-seq
Assay category
  • 64DNA accessibility
  • 51DNA binding
  • 1Transcription
Target of assay
  • 36control
  • 9histone
  • 9histone modification
  • 7broad histone mark
  • 6transcription factor
  • 2narrow histone mark
Date released
  • 39May, 2022
  • 21November, 2017
  • 16August, 2017
  • 16February, 2021
  • 15December, 2017
  • 5January, 2018
  • 5September, 2017
  • 2January, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 81fastq
  • 60bam
  • 40zippedFastqFolder
  • 29bigWig
  • 23bed narrowPeak
  • 16bigBed narrowPeak
Organism
  • 121Homo sapiens
Biosample type
  • 64primary cell
  • 23cell line
  • 22tissue
  • 11in vitro differentiated cells
  • 1stem cell
Organ
  • 53pancreas
  • 48epithelium
  • 36liver
  • 5embryo
  • 2blood
  • 2bodily fluid
  • 1brain
Project
  • 65AMP
  • 56HPAP
Genome assembly (visualization)
  • 24GRCh38
  • 23hg19
  • 5hg18
Lab
  • 65AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 8inconsistent control read length
BIOSAMPLE
ASSAY

121 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
cell line
HepG221
GM128782
tissue
liver15
pancreas4
islet of Langerhans2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm31
Posterior foregut11
definitive endodermal cell11
primitive gut cell11
Hepatic endoderm1
stem cell
hESC1
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