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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 53ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 66DNA accessibility
  • 53DNA binding
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 39May, 2022
  • 22November, 2017
  • 16December, 2017
  • 16February, 2021
  • 15August, 2017
  • 8January, 2019
  • 5January, 2018
  • 5September, 2017
  • 1December, 2018
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 91fastq
  • 69bam
  • 40zippedFastqFolder
  • 36bigWig
  • 24bed narrowPeak
  • 17bigBed narrowPeak
  • 6bed bed3+
  • 5tsv
  • 1bed broadPeak
Organism
  • 131Homo sapiens
Biosample type
  • 64primary cell
  • 31cell line
  • 23tissue
  • 10in vitro differentiated cells
  • 3stem cell
Organ
  • 55pancreas
  • 48epithelium
  • 42liver
  • 4embryo
  • 3blood
  • 3bodily fluid
  • 1brain
Project
  • 75AMP
  • 56HPAP
Genome assembly (visualization)
  • 30hg19
  • 29GRCh38
  • 5hg18
Lab
  • 74AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 10inconsistent control read length
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

131 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
cell line
HepG22251
GM128783
tissue
liver14
pancreas41
islet of Langerhans21
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm21
Posterior foregut11
definitive endodermal cell11
primitive gut cell11
Hepatic endoderm1
stem cell
hESC21
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