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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 52ChIP-seq
  • 38snATAC-seq
Assay category
  • 52DNA binding
  • 38DNA accessibility
Target of assay
  • 42histone
  • 42histone modification
  • 23narrow histone mark
  • 19broad histone mark
  • 9transcription factor
  • 2RNA binding protein
  • 1control
Date released
  • 31September, 2018
  • 21May, 2022
  • 19August, 2017
  • 17February, 2021
  • 2October, 2018
Available data
  • 69fastq
  • 52bam
  • 51bigWig
  • 32bed narrowPeak
  • 21zippedFastqFolder
  • 5bed bed3+
  • 1bigBed narrowPeak
Organism
  • 90Homo sapiens
Biosample type
  • 78primary cell
  • 7tissue
  • 5in vitro differentiated cells
Organ
  • 47pancreas
  • 21epithelium
  • 5connective tissue
Project
  • 52AMP
  • 38HPAP
Genome assembly (visualization)
  • 51GRCh38
  • 51hg19
Lab
  • 52AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
Audit category:
  • 17audit script error
Audit category:
  • 50missing controlled_by
files.read_length!
  • 36
BIOSAMPLE
ASSAY

90 results

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Clear Filters
ChIP-seq
snATAC-seq
primary cell
Langerhans cell38
pancreatic endocrine cell19
pancreatic ductal cell13
pancreatic acinar cell8
tissue
islet of Langerhans5
pancreas2
in vitro differentiated cells
adipocyte5
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