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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
190
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
64
histone
64
histone modification
37
broad histone mark
27
narrow histone mark
21
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
69
November, 2017
31
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
200
fastq
190
bam
178
bigWig
168
bed narrowPeak
138
bigBed narrowPeak
1
zippedFastqFolder
Organism
201
Homo sapiens
Biosample type
96
cell line
48
tissue
46
in vitro differentiated cells
11
primary cell
Organ
107
liver
40
connective tissue
30
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
190
AMP
11
HPAP
Genome assembly (visualization)
178
GRCh38
165
hg19
Lab
190
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
201 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
86
GM12878
10
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
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