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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 190DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 105transcription factor
  • 70recombinant protein
  • 64histone
  • 64histone modification
  • 37broad histone mark
  • 27narrow histone mark
  • 21control
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 69November, 2017
  • 31August, 2017
  • 29October, 2018
  • 26November, 2018
  • 21December, 2017
  • 12January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 200fastq
  • 190bam
  • 178bigWig
  • 168bed narrowPeak
  • 138bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 201Homo sapiens
Biosample type
  • 96cell line
  • 48tissue
  • 46in vitro differentiated cells
  • 11primary cell
Organ
  • 107liver
  • 40connective tissue
  • 30pancreas
  • 25epithelium
  • 13spleen
  • 10blood
  • 10bodily fluid
  • 9adipose tissue
Project
  • 190AMP
  • 11HPAP
Genome assembly (visualization)
  • 178GRCh38
  • 165hg19
Lab
  • 190AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 3inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

201 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG286
GM1287810
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
hepatocyte15
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
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