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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
192
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
104
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
70
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
202
fastq
192
bam
179
bigWig
169
bed narrowPeak
139
bigBed narrowPeak
1
zippedFastqFolder
Organism
203
Homo sapiens
Biosample type
97
cell line
48
tissue
46
in vitro differentiated cells
12
primary cell
Organ
108
liver
40
connective tissue
30
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
192
AMP
11
HPAP
Genome assembly (visualization)
179
GRCh38
166
hg19
Lab
192
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.read_length!
50
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
87
GM12878
10
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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