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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
189
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
101
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
10
RNA binding protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
10
January, 2019
7
August, 2020
4
September, 2020
Available data
199
fastq
189
bam
176
bigWig
166
bed narrowPeak
136
bigBed narrowPeak
1
zippedFastqFolder
Organism
200
Homo sapiens
Biosample type
94
cell line
48
tissue
46
in vitro differentiated cells
12
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
25
epithelium
13
spleen
9
adipose tissue
6
blood
6
bodily fluid
Project
189
AMP
11
HPAP
Genome assembly (visualization)
176
GRCh38
163
hg19
Lab
189
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.read_length!
75
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
6
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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