Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 189ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 189DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 101transcription factor
  • 70recombinant protein
  • 66histone
  • 66histone modification
  • 37broad histone mark
  • 29narrow histone mark
  • 22control
  • 10RNA binding protein
  • 7chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 71November, 2017
  • 32August, 2017
  • 29October, 2018
  • 26November, 2018
  • 21December, 2017
  • 10January, 2019
  • 7August, 2020
  • 4September, 2020
Available data
  • 199fastq
  • 189bam
  • 176bigWig
  • 166bed narrowPeak
  • 136bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 200Homo sapiens
Biosample type
  • 94cell line
  • 48tissue
  • 46in vitro differentiated cells
  • 12primary cell
Organ
  • 109liver
  • 40connective tissue
  • 30pancreas
  • 25epithelium
  • 13spleen
  • 9adipose tissue
  • 6blood
  • 6bodily fluid
Project
  • 189AMP
  • 11HPAP
Genome assembly (visualization)
  • 176GRCh38
  • 163hg19
Lab
  • 189AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 75
BIOSAMPLE
ASSAY

200 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG288
GM128786
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
hepatocyte15
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego