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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
1
single cell RNA-seq
Assay category
179
DNA binding
1
Transcription
Target of assay
102
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
12
RNA binding protein
11
chromatin remodeller
11
control
Date released
71
November, 2017
32
August, 2017
21
December, 2017
21
October, 2018
20
November, 2018
12
January, 2019
2
December, 2018
1
September, 2020
Available data
179
bam
179
fastq
167
bed narrowPeak
167
bigWig
137
bigBed narrowPeak
1
zippedFastqFolder
Organism
180
Homo sapiens
Biosample type
98
cell line
46
in vitro differentiated cells
34
tissue
2
primary cell
Organ
109
liver
32
connective tissue
20
pancreas
15
epithelium
10
blood
10
bodily fluid
7
spleen
1
adipose tissue
Project
179
AMP
1
HPAP
Genome assembly (visualization)
167
GRCh38
164
hg19
Lab
179
AMP-T2D consortium
1
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
body of pancreas
20
spleen
7
right lobe of liver
6
omental fat pad
1
primary cell
Langerhans cell
1
skeletal muscle myoblast
1
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