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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 161ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 161DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 99transcription factor
  • 70recombinant protein
  • 41histone
  • 41histone modification
  • 25broad histone mark
  • 21control
  • 16narrow histone mark
  • 11chromatin remodeller
  • 8RNA binding protein
  • 3other context
  • 3other post-translational modification
Date released
  • 71November, 2017
  • August, 2017
  • 29October, 2018
  • 26November, 2018
  • 21December, 2017
  • 12January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 171fastq
  • 161bam
  • 149bigWig
  • 139bed narrowPeak
  • 139bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 172Homo sapiens
Biosample type
  • 98cell line
  • 48tissue
  • 15in vitro differentiated cells
  • 11primary cell
Organ
  • 109liver
  • 30pancreas
  • 25epithelium
  • 13spleen
  • 10blood
  • 10bodily fluid
  • 9adipose tissue
  • 9connective tissue
Project
  • 161AMP
  • 11HPAP
Genome assembly (visualization)
  • 149GRCh38
  • 136hg19
Lab
  • 161AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 3inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

172 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG288
GM1287810
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
hepatocyte15
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
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