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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
161
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
99
transcription factor
70
recombinant protein
41
histone
41
histone modification
25
broad histone mark
21
control
16
narrow histone mark
11
chromatin remodeller
8
RNA binding protein
3
other context
3
other post-translational modification
Date released
71
November, 2017
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
171
fastq
161
bam
149
bigWig
139
bed narrowPeak
139
bigBed narrowPeak
1
zippedFastqFolder
Organism
172
Homo sapiens
Biosample type
98
cell line
48
tissue
15
in vitro differentiated cells
11
primary cell
Organ
109
liver
30
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
9
connective tissue
Project
161
AMP
11
HPAP
Genome assembly (visualization)
149
GRCh38
136
hg19
Lab
161
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
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