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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
172
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
103
transcription factor
70
recombinant protein
49
histone
49
histone modification
27
broad histone mark
22
narrow histone mark
20
control
10
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
182
fastq
172
bam
161
bigWig
151
bed narrowPeak
121
bigBed narrowPeak
1
zippedFastqFolder
Organism
183
Homo sapiens
Biosample type
98
cell line
42
tissue
31
in vitro differentiated cells
12
primary cell
Organ
88
liver
40
connective tissue
30
pancreas
13
spleen
10
blood
10
bodily fluid
10
epithelium
9
adipose tissue
Project
172
AMP
11
HPAP
Genome assembly (visualization)
161
GRCh38
148
hg19
Lab
172
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2017
BIOSAMPLE
ASSAY
183 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
tissue
body of pancreas
20
spleen
13
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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