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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
191
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
103
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
December, 2018
Available data
201
fastq
191
bam
178
bigWig
168
bed narrowPeak
138
bigBed narrowPeak
1
zippedFastqFolder
Organism
202
Homo sapiens
Biosample type
96
cell line
48
tissue
46
in vitro differentiated cells
12
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
25
epithelium
13
spleen
9
adipose tissue
8
blood
8
bodily fluid
Project
191
AMP
11
HPAP
Genome assembly (visualization)
178
GRCh38
165
hg19
Lab
191
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2018
BIOSAMPLE
ASSAY
202 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
8
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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