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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
181
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
101
transcription factor
70
recombinant protein
59
histone
59
histone modification
33
broad histone mark
26
narrow histone mark
21
control
8
RNA binding protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
191
fastq
181
bam
169
bigWig
159
bed narrowPeak
129
bigBed narrowPeak
1
zippedFastqFolder
Organism
192
Homo sapiens
Biosample type
93
cell line
46
in vitro differentiated cells
41
tissue
12
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
25
epithelium
9
adipose tissue
6
spleen
5
blood
5
bodily fluid
Project
181
AMP
11
HPAP
Genome assembly (visualization)
169
GRCh38
156
hg19
Lab
181
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
5
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
body of pancreas
20
right lobe of liver
6
spleen
6
omental fat pad
5
subcutaneous adipose tissue
4
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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