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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 122DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 65histone
  • 65histone modification
  • 37broad histone mark
  • 37transcription factor
  • 28narrow histone mark
  • 20control
  • 16recombinant protein
  • 12RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • November, 2017
  • 32August, 2017
  • 29October, 2018
  • 26November, 2018
  • 21December, 2017
  • 12January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 132fastq
  • 122bam
  • 111bigWig
  • 101bed narrowPeak
  • 71bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 133Homo sapiens
Biosample type
  • 48tissue
  • 46in vitro differentiated cells
  • 27cell line
  • 12primary cell
Organ
  • 40connective tissue
  • 38liver
  • 30pancreas
  • 25epithelium
  • 13spleen
  • 10blood
  • 10bodily fluid
  • 9adipose tissue
Project
  • 122AMP
  • 11HPAP
Genome assembly (visualization)
  • 111GRCh38
  • 99hg19
Lab
  • 122AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

133 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
hepatocyte15
cell line
HepG217
GM1287810
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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