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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
122
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
65
histone
65
histone modification
37
broad histone mark
37
transcription factor
28
narrow histone mark
20
control
16
recombinant protein
12
RNA binding protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
132
fastq
122
bam
111
bigWig
101
bed narrowPeak
71
bigBed narrowPeak
1
zippedFastqFolder
Organism
133
Homo sapiens
Biosample type
48
tissue
46
in vitro differentiated cells
27
cell line
12
primary cell
Organ
40
connective tissue
38
liver
30
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
122
AMP
11
HPAP
Genome assembly (visualization)
111
GRCh38
99
hg19
Lab
122
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
cell line
HepG2
17
GM12878
10
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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