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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
167
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
83
transcription factor
66
histone
66
histone modification
54
recombinant protein
37
broad histone mark
29
narrow histone mark
18
control
11
RNA binding protein
9
chromatin remodeller
Date released
71
November, 2017
32
August, 2017
29
October, 2018
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
177
fastq
167
bam
159
bigWig
149
bed narrowPeak
119
bigBed narrowPeak
1
zippedFastqFolder
Organism
178
Homo sapiens
Biosample type
78
cell line
46
in vitro differentiated cells
42
tissue
12
primary cell
Organ
92
liver
40
connective tissue
30
pancreas
25
epithelium
9
adipose tissue
7
blood
7
bodily fluid
7
spleen
Project
167
AMP
11
HPAP
Genome assembly (visualization)
159
GRCh38
148
hg19
Lab
167
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
71
GM12878
7
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
body of pancreas
20
spleen
7
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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