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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 167ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 167DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 83transcription factor
  • 66histone
  • 66histone modification
  • 54recombinant protein
  • 37broad histone mark
  • 29narrow histone mark
  • 18control
  • 11RNA binding protein
  • 9chromatin remodeller
Date released
  • 71November, 2017
  • 32August, 2017
  • 29October, 2018
  • November, 2018
  • 21December, 2017
  • 12January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 177fastq
  • 167bam
  • 159bigWig
  • 149bed narrowPeak
  • 119bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 178Homo sapiens
Biosample type
  • 78cell line
  • 46in vitro differentiated cells
  • 42tissue
  • 12primary cell
Organ
  • 92liver
  • 40connective tissue
  • 30pancreas
  • 25epithelium
  • 9adipose tissue
  • 7blood
  • 7bodily fluid
  • 7spleen
Project
  • 167AMP
  • 11HPAP
Genome assembly (visualization)
  • 159GRCh38
  • 148hg19
Lab
  • 167AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

178 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG271
GM128787
in vitro differentiated cells
adipocyte31
hepatocyte15
tissue
body of pancreas20
spleen7
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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