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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
164
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
104
transcription factor
70
recombinant protein
50
histone
50
histone modification
26
broad histone mark
24
narrow histone mark
11
RNA binding protein
11
chromatin remodeller
10
control
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
October, 2018
26
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
174
fastq
164
bam
163
bigWig
153
bed narrowPeak
123
bigBed narrowPeak
1
zippedFastqFolder
Organism
175
Homo sapiens
Biosample type
98
cell line
46
in vitro differentiated cells
19
tissue
12
primary cell
Organ
109
liver
31
connective tissue
25
epithelium
13
spleen
10
blood
10
bodily fluid
10
pancreas
Project
164
AMP
11
HPAP
Genome assembly (visualization)
163
GRCh38
150
hg19
Lab
164
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2018
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
spleen
13
right lobe of liver
6
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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