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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 183ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 183DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 97transcription factor
  • 70recombinant protein
  • 65histone
  • 65histone modification
  • 37broad histone mark
  • 28narrow histone mark
  • 21control
  • 7RNA binding protein
  • 3chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 71November, 2017
  • 32August, 2017
  • 29October, 2018
  • 23November, 2018
  • 21December, 2017
  • 7August, 2020
  • 7January, 2019
  • 4September, 2020
Available data
  • 193fastq
  • 183bam
  • 171bigWig
  • 161bed narrowPeak
  • 131bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 194Homo sapiens
Biosample type
  • 88cell line
  • 48tissue
  • 46in vitro differentiated cells
  • 12primary cell
Organ
  • 109liver
  • 40connective tissue
  • 30pancreas
  • 25epithelium
  • 13spleen
  • 10blood
  • bodily fluid
  • 9adipose tissue
Project
  • 183AMP
  • 11HPAP
Genome assembly (visualization)
  • 171GRCh38
  • 158hg19
Lab
  • 183AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • bodily fluid
BIOSAMPLE
ASSAY

194 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG288
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
hepatocyte15
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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