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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
183
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
97
transcription factor
70
recombinant protein
65
histone
65
histone modification
37
broad histone mark
28
narrow histone mark
21
control
7
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
23
November, 2018
21
December, 2017
7
August, 2020
7
January, 2019
4
September, 2020
Available data
193
fastq
183
bam
171
bigWig
161
bed narrowPeak
131
bigBed narrowPeak
1
zippedFastqFolder
Organism
194
Homo sapiens
Biosample type
88
cell line
48
tissue
46
in vitro differentiated cells
12
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
25
epithelium
13
spleen
10
blood
bodily fluid
9
adipose tissue
Project
183
AMP
11
HPAP
Genome assembly (visualization)
171
GRCh38
158
hg19
Lab
183
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
194 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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