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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178ChIP-seq
  • 1single cell RNA-seq
Assay category
  • 178DNA binding
  • 1Transcription
Target of assay
  • 103transcription factor
  • 70recombinant protein
  • 54histone
  • 54histone modification
  • 30broad histone mark
  • 24narrow histone mark
  • 21control
  • 10RNA binding protein
  • 10chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 71November, 2017
  • 32August, 2017
  • 29October, 2018
  • 26November, 2018
  • 12January, 2019
  • 6December, 2017
  • 2December, 2018
  • 1September, 2020
Available data
  • 178bam
  • 178fastq
  • 156bed narrowPeak
  • 156bigWig
  • 126bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 179Homo sapiens
Biosample type
  • 98cell line
  • 48tissue
  • 31in vitro differentiated cells
  • 2primary cell
Organ
  • 109liver
  • 40connective tissue
  • 30pancreas
  • epithelium
  • 13spleen
  • 10blood
  • 10bodily fluid
  • 9adipose tissue
Project
  • 178AMP
  • 1HPAP
Genome assembly (visualization)
  • 156GRCh38
  • 153hg19
Lab
  • 178AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

179 results

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Clear Filters
ChIP-seq
single cell RNA-seq
cell line
HepG288
GM1287810
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
primary cell
Langerhans cell1
skeletal muscle myoblast1
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