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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
1
single cell RNA-seq
Assay category
178
DNA binding
1
Transcription
Target of assay
103
transcription factor
70
recombinant protein
54
histone
54
histone modification
30
broad histone mark
24
narrow histone mark
21
control
10
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
26
November, 2018
12
January, 2019
6
December, 2017
2
December, 2018
1
September, 2020
Available data
178
bam
178
fastq
156
bed narrowPeak
156
bigWig
126
bigBed narrowPeak
1
zippedFastqFolder
Organism
179
Homo sapiens
Biosample type
98
cell line
48
tissue
31
in vitro differentiated cells
2
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
178
AMP
1
HPAP
Genome assembly (visualization)
156
GRCh38
153
hg19
Lab
178
AMP-T2D consortium
1
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
primary cell
Langerhans cell
1
skeletal muscle myoblast
1
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