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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 84DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 48histone
  • 48histone modification
  • 27broad histone mark
  • 21narrow histone mark
  • 18control
  • 18transcription factor
  • 10RNA binding protein
  • 8chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 32August, 2017
  • 29October, 2018
  • 12January, 2019
  • 9November, 2018
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 94fastq
  • 84bam
  • 76bigWig
  • 66bed narrowPeak
  • 36bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 95Homo sapiens
Biosample type
  • 42tissue
  • 31in vitro differentiated cells
  • 12primary cell
  • 10cell line
Organ
  • liver
  • 40connective tissue
  • 30pancreas
  • 25epithelium
  • 13spleen
  • 10blood
  • 10bodily fluid
  • 9adipose tissue
Project
  • 84AMP
  • 11HPAP
Genome assembly (visualization)
  • 76GRCh38
  • 66hg19
Lab
  • 84AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

95 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas20
spleen13
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
cell line
GM1287810
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