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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
84
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
48
histone
48
histone modification
27
broad histone mark
21
narrow histone mark
18
control
18
transcription factor
10
RNA binding protein
8
chromatin remodeller
3
other context
3
other post-translational modification
Date released
32
August, 2017
29
October, 2018
12
January, 2019
9
November, 2018
7
August, 2020
4
September, 2020
2
December, 2018
Available data
94
fastq
84
bam
76
bigWig
66
bed narrowPeak
36
bigBed narrowPeak
1
zippedFastqFolder
Organism
95
Homo sapiens
Biosample type
42
tissue
31
in vitro differentiated cells
12
primary cell
10
cell line
Organ
liver
40
connective tissue
30
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
84
AMP
11
HPAP
Genome assembly (visualization)
76
GRCh38
66
hg19
Lab
84
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas
20
spleen
13
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
cell line
GM12878
10
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