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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
1
single cell RNA-seq
Assay category
173
DNA binding
1
Transcription
Target of assay
104
transcription factor
70
recombinant protein
50
histone
50
histone modification
26
broad histone mark
24
narrow histone mark
19
control
11
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
32
August, 2017
26
November, 2018
21
December, 2017
12
January, 2019
9
October, 2018
2
December, 2018
1
September, 2020
Available data
173
bam
173
fastq
153
bed narrowPeak
153
bigWig
123
bigBed narrowPeak
1
zippedFastqFolder
Organism
174
Homo sapiens
Biosample type
98
cell line
46
in vitro differentiated cells
28
tissue
2
primary cell
Organ
109
liver
40
connective tissue
pancreas
25
epithelium
13
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
173
AMP
1
HPAP
Genome assembly (visualization)
153
GRCh38
150
hg19
Lab
173
AMP-T2D consortium
1
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
174 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
primary cell
Langerhans cell
1
skeletal muscle myoblast
1
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