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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
180
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
102
transcription factor
70
recombinant protein
60
histone
60
histone modification
33
broad histone mark
27
narrow histone mark
18
control
12
RNA binding protein
11
chromatin remodeller
Date released
71
November, 2017
32
August, 2017
29
October, 2018
21
December, 2017
20
November, 2018
7
August, 2020
5
January, 2019
4
September, 2020
2
December, 2018
Available data
190
fastq
180
bam
171
bigWig
161
bed narrowPeak
131
bigBed narrowPeak
1
zippedFastqFolder
Organism
191
Homo sapiens
Biosample type
98
cell line
46
in vitro differentiated cells
35
tissue
12
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
25
epithelium
spleen
10
blood
10
bodily fluid
9
adipose tissue
Project
180
AMP
11
HPAP
Genome assembly (visualization)
171
GRCh38
158
hg19
Lab
180
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
spleen
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
body of pancreas
20
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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