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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 74DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 42histone
  • 42histone modification
  • 26broad histone mark
  • 19control
  • 16narrow histone mark
  • 13transcription factor
  • 6RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 31August, 2017
  • 22October, 2018
  • 9November, 2018
  • 7August, 2020
  • 7January, 2019
  • 4December, 2017
  • 4September, 2020
  • 1November, 2017
Available data
  • 84fastq
  • 74bam
  • 64bigWig
  • 54bed narrowPeak
  • 24bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 85Homo sapiens
Biosample type
  • 39tissue
  • 31in vitro differentiated cells
  • 11primary cell
  • 4cell line
Organ
  • 40connective tissue
  • 23pancreas
  • 13spleen
  • 10epithelium
  • 9adipose tissue
  • 6liver
  • 2blood
  • 2bodily fluid
Project
  • 74AMP
  • 11HPAP
Genome assembly (visualization)
  • 64GRCh38
  • 54hg19
Lab
  • 74AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1missing controlled_by
BIOSAMPLE
ASSAY

85 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas13
spleen13
omental fat pad5
right lobe of liver4
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
cell line
GM128782
HepG22
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