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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
181
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
28
August, 2017
28
October, 2018
25
November, 2018
19
December, 2017
8
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
191
fastq
181
bam
168
bigWig
158
bed narrowPeak
132
bigBed narrowPeak
1
zippedFastqFolder
Organism
192
Homo sapiens
Biosample type
93
cell line
47
tissue
40
in vitro differentiated cells
12
primary cell
Organ
107
liver
36
connective tissue
29
pancreas
23
epithelium
13
spleen
9
adipose tissue
5
blood
5
bodily fluid
Project
181
AMP
11
HPAP
Genome assembly (visualization)
168
GRCh38
155
hg19
Lab
181
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
5
tissue
body of pancreas
19
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
27
hepatocyte
13
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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