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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
156
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
66
histone modification
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
71
November, 2017
26
November, 2018
20
August, 2017
18
October, 2018
11
December, 2017
8
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
166
fastq
156
bam
143
bigWig
133
bed narrowPeak
115
bigBed narrowPeak
1
zippedFastqFolder
Organism
167
Homo sapiens
Biosample type
98
cell line
30
tissue
27
in vitro differentiated cells
12
primary cell
Organ
99
liver
28
connective tissue
19
pancreas
18
epithelium
10
blood
10
bodily fluid
9
adipose tissue
9
spleen
Project
156
AMP
11
HPAP
Genome assembly (visualization)
143
GRCh38
130
hg19
Lab
156
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
tissue
body of pancreas
9
spleen
9
omental fat pad
5
subcutaneous adipose tissue
4
right lobe of liver
3
in vitro differentiated cells
adipocyte
19
hepatocyte
8
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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