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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 156ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 156DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 105transcription factor
  • 70recombinant protein
  • 66histone
  • 66histone modification
  • broad histone mark
  • 29narrow histone mark
  • 22control
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 71November, 2017
  • 26November, 2018
  • 20August, 2017
  • 18October, 2018
  • 11December, 2017
  • 8January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 166fastq
  • 156bam
  • 143bigWig
  • 133bed narrowPeak
  • 115bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 167Homo sapiens
Biosample type
  • 98cell line
  • 30tissue
  • 27in vitro differentiated cells
  • 12primary cell
Organ
  • 99liver
  • 28connective tissue
  • 19pancreas
  • 18epithelium
  • 10blood
  • 10bodily fluid
  • 9adipose tissue
  • 9spleen
Project
  • 156AMP
  • 11HPAP
Genome assembly (visualization)
  • 143GRCh38
  • 130hg19
Lab
  • 156AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

167 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG288
GM1287810
tissue
body of pancreas9
spleen9
omental fat pad5
subcutaneous adipose tissue4
right lobe of liver3
in vitro differentiated cells
adipocyte19
hepatocyte8
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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