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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
182
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
chromatin remodeller
3
other context
3
other post-translational modification
Date released
69
November, 2017
32
August, 2017
29
October, 2018
24
November, 2018
20
December, 2017
8
January, 2019
7
August, 2020
4
September, 2020
Available data
192
fastq
182
bam
169
bigWig
159
bed narrowPeak
129
bigBed narrowPeak
1
zippedFastqFolder
Organism
193
Homo sapiens
Biosample type
88
cell line
48
tissue
45
in vitro differentiated cells
12
primary cell
Organ
106
liver
40
connective tissue
30
pancreas
24
epithelium
13
spleen
9
adipose tissue
2
blood
2
bodily fluid
Project
182
AMP
11
HPAP
Genome assembly (visualization)
169
GRCh38
156
hg19
Lab
182
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
86
GM12878
2
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
14
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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