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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
171
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
69
November, 2017
31
August, 2017
22
November, 2018
19
December, 2017
17
October, 2018
11
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
181
fastq
180
bigWig
171
bam
170
bed narrowPeak
140
bigBed narrowPeak
1
zippedFastqFolder
Organism
182
Homo sapiens
Biosample type
95
cell line
44
in vitro differentiated cells
31
tissue
12
primary cell
Organ
105
liver
30
connective tissue
27
pancreas
24
epithelium
9
blood
9
bodily fluid
9
spleen
Project
171
AMP
11
HPAP
Genome assembly (visualization)
180
GRCh38
167
hg19
Lab
171
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
86
GM12878
9
in vitro differentiated cells
adipocyte
30
hepatocyte
14
tissue
body of pancreas
17
spleen
9
right lobe of liver
5
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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