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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 171ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 171DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 105transcription factor
  • 70recombinant protein
  • 66histone
  • 66histone modification
  • 37broad histone mark
  • 29narrow histone mark
  • control
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 69November, 2017
  • 31August, 2017
  • 22November, 2018
  • 19December, 2017
  • 17October, 2018
  • 11January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 181fastq
  • 180bigWig
  • 171bam
  • 170bed narrowPeak
  • 140bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 182Homo sapiens
Biosample type
  • 95cell line
  • 44in vitro differentiated cells
  • 31tissue
  • 12primary cell
Organ
  • 105liver
  • 30connective tissue
  • 27pancreas
  • 24epithelium
  • 9blood
  • 9bodily fluid
  • 9spleen
Project
  • 171AMP
  • 11HPAP
Genome assembly (visualization)
  • 180GRCh38
  • 167hg19
Lab
  • 171AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

182 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG286
GM128789
in vitro differentiated cells
adipocyte30
hepatocyte14
tissue
body of pancreas17
spleen9
right lobe of liver5
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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