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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 127ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 127DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 105transcription factor
  • 70recombinant protein
  • histone
  • 66histone modification
  • 37broad histone mark
  • 29narrow histone mark
  • 22control
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 70November, 2017
  • 26November, 2018
  • 13October, 2018
  • 7August, 2017
  • 7August, 2020
  • 5January, 2019
  • 4December, 2017
  • 4September, 2020
  • 2December, 2018
Available data
  • 137fastq
  • 127bam
  • 114bigWig
  • 104bed narrowPeak
  • 98bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 138Homo sapiens
Biosample type
  • 96cell line
  • 21tissue
  • 11primary cell
  • 10in vitro differentiated cells
Organ
  • 91liver
  • 16connective tissue
  • 14pancreas
  • 13epithelium
  • 9adipose tissue
  • 9blood
  • 9bodily fluid
  • 7spleen
Project
  • 127AMP
  • 11HPAP
Genome assembly (visualization)
  • 114GRCh38
  • 101hg19
Lab
  • 127AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

138 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG287
GM128789
tissue
spleen7
omental fat pad5
body of pancreas4
subcutaneous adipose tissue4
right lobe of liver1
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
in vitro differentiated cells
adipocyte7
hepatocyte3
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