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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
127
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
histone modification
37
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
70
November, 2017
26
November, 2018
13
October, 2018
7
August, 2017
7
August, 2020
5
January, 2019
4
December, 2017
4
September, 2020
2
December, 2018
Available data
137
fastq
127
bam
114
bigWig
104
bed narrowPeak
98
bigBed narrowPeak
1
zippedFastqFolder
Organism
138
Homo sapiens
Biosample type
96
cell line
21
tissue
11
primary cell
10
in vitro differentiated cells
Organ
91
liver
16
connective tissue
14
pancreas
13
epithelium
9
adipose tissue
9
blood
9
bodily fluid
7
spleen
Project
127
AMP
11
HPAP
Genome assembly (visualization)
114
GRCh38
101
hg19
Lab
127
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
87
GM12878
9
tissue
spleen
7
omental fat pad
5
body of pancreas
4
subcutaneous adipose tissue
4
right lobe of liver
1
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
in vitro differentiated cells
adipocyte
7
hepatocyte
3
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