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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
164
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
narrow histone mark
22
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
70
November, 2017
26
November, 2018
24
October, 2018
19
August, 2017
14
December, 2017
9
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
174
fastq
164
bam
151
bigWig
141
bed narrowPeak
123
bigBed narrowPeak
1
zippedFastqFolder
Organism
175
Homo sapiens
Biosample type
96
cell line
39
tissue
29
in vitro differentiated cells
11
primary cell
Organ
101
liver
28
connective tissue
25
pancreas
20
epithelium
11
spleen
9
adipose tissue
9
blood
9
bodily fluid
Project
164
AMP
11
HPAP
Genome assembly (visualization)
151
GRCh38
138
hg19
Lab
164
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
87
GM12878
9
tissue
body of pancreas
15
spleen
11
omental fat pad
5
right lobe of liver
4
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
19
hepatocyte
10
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
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