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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 164ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 164DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 105transcription factor
  • 70recombinant protein
  • 66histone
  • 66histone modification
  • 37broad histone mark
  • narrow histone mark
  • 22control
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 70November, 2017
  • 26November, 2018
  • 24October, 2018
  • 19August, 2017
  • 14December, 2017
  • 9January, 2019
  • 7August, 2020
  • 4September, 2020
  • 2December, 2018
Available data
  • 174fastq
  • 164bam
  • 151bigWig
  • 141bed narrowPeak
  • 123bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 175Homo sapiens
Biosample type
  • 96cell line
  • 39tissue
  • 29in vitro differentiated cells
  • 11primary cell
Organ
  • 101liver
  • 28connective tissue
  • 25pancreas
  • 20epithelium
  • 11spleen
  • 9adipose tissue
  • 9blood
  • 9bodily fluid
Project
  • 164AMP
  • 11HPAP
Genome assembly (visualization)
  • 151GRCh38
  • 138hg19
Lab
  • 164AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

175 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG287
GM128789
tissue
body of pancreas15
spleen11
omental fat pad5
right lobe of liver4
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte19
hepatocyte10
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
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