Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
190
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
105
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
11
chromatin remodeller
3
other context
other post-translational modification
Date released
71
November, 2017
32
August, 2017
29
October, 2018
23
November, 2018
21
December, 2017
12
January, 2019
7
August, 2020
4
September, 2020
2
December, 2018
Available data
200
fastq
190
bam
177
bigWig
167
bed narrowPeak
137
bigBed narrowPeak
1
zippedFastqFolder
Organism
201
Homo sapiens
Biosample type
98
cell line
46
in vitro differentiated cells
45
tissue
12
primary cell
Organ
109
liver
40
connective tissue
30
pancreas
25
epithelium
10
blood
10
bodily fluid
10
spleen
9
adipose tissue
Project
190
AMP
11
HPAP
Genome assembly (visualization)
177
GRCh38
164
hg19
Lab
190
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
201 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
in vitro differentiated cells
adipocyte
31
hepatocyte
15
tissue
body of pancreas
20
spleen
10
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
Download