Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 88DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • transcription factor
  • 70recombinant protein
  • 66histone
  • 66histone modification
  • 37broad histone mark
  • 29narrow histone mark
  • 22control
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 28October, 2018
  • 26August, 2017
  • 19December, 2017
  • 8January, 2019
  • 7August, 2020
  • 4November, 2018
  • 4September, 2020
  • 3November, 2017
Available data
  • 98fastq
  • 88bam
  • 76bigWig
  • 66bed narrowPeak
  • 42bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 99Homo sapiens
Biosample type
  • 44tissue
  • 38in vitro differentiated cells
  • 12primary cell
  • 5cell line
Organ
  • 34connective tissue
  • 29pancreas
  • 23epithelium
  • 22liver
  • 10spleen
  • 9adipose tissue
  • 2blood
  • 2bodily fluid
Project
  • 88AMP
  • 11HPAP
Genome assembly (visualization)
  • 76GRCh38
  • 66hg19
Lab
  • 88AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

99 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas19
spleen10
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte25
hepatocyte13
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
cell line
HepG23
GM128782
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego