Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
88
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
transcription factor
70
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
22
control
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
28
October, 2018
26
August, 2017
19
December, 2017
8
January, 2019
7
August, 2020
4
November, 2018
4
September, 2020
3
November, 2017
Available data
98
fastq
88
bam
76
bigWig
66
bed narrowPeak
42
bigBed narrowPeak
1
zippedFastqFolder
Organism
99
Homo sapiens
Biosample type
44
tissue
38
in vitro differentiated cells
12
primary cell
5
cell line
Organ
34
connective tissue
29
pancreas
23
epithelium
22
liver
10
spleen
9
adipose tissue
2
blood
2
bodily fluid
Project
88
AMP
11
HPAP
Genome assembly (visualization)
76
GRCh38
66
hg19
Lab
88
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas
19
spleen
10
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
25
hepatocyte
13
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
cell line
HepG2
3
GM12878
2
Download