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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
51
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
51
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
7
control
Date released
386
February, 2021
56
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2018
1
October, 2019
Available data
417
bam
417
bigWig
401
tsv
18
fastq
8
tagAlign
5
bed bed3+
5
bed narrowPeak
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
464
Homo sapiens
Biosample type
463
tissue
2
primary cell
Organ
711
liver
657
connective tissue
651
pancreas
465
adipose tissue
393
heart
367
epithelium
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
37
embryo
24
blood
24
bodily fluid
22
vein
20
lung
18
ureter
16
skeleton
8
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
465
AMP
Genome assembly (visualization)
418
hg19
416
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
465 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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