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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 51ChIP-seq
  • 6WGBS
  • 4ATAC-seq
  • 3small RNA-seq
  • 1DNase-seq
  • 1RNA microarray
  • 1pCHi-C
Assay category
  • 401Transcription
  • 51DNA binding
  • 6DNA methylation
  • 5DNA accessibility
Target of assay
  • 32histone
  • 32histone modification
  • 20broad histone mark
  • 12narrow histone mark
  • 12transcription factor
  • 7control
Date released
  • 386February, 2021
  • 56August, 2017
  • 12July, 2019
  • 2February, 2020
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2019
  • 1October, 2018
  • 1October, 2019
Available data
  • 417bam
  • 417bigWig
  • 401tsv
  • 18fastq
  • 8tagAlign
  • 5bed bed3+
  • 5bed narrowPeak
  • 3bigBed narrowPeak
  • 2bed bedMethyl
  • 2bed broadPeak
  • 2bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 464Homo sapiens
Biosample type
  • 463tissue
  • 2primary cell
Organ
  • 711liver
  • 657connective tissue
  • 651pancreas
  • 465adipose tissue
  • 393heart
  • 367epithelium
  • 354kidney
  • 285brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 43nerve
  • 37embryo
  • 24blood
  • 24bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 465AMP
Genome assembly (visualization)
  • 418hg19
  • 416GRCh38
Lab
  • 465AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

465 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue3822331
subcutaneous abdominal adipose tissue363
white adipose tissue12
subcutaneous adipose tissue711
omental fat pad5111
primary cell
mesenchymal stem cell of adipose11
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