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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 483ChIP-seq
  • 184total RNA-seq
  • 22ATAC-seq
  • 4WGBS
  • 3DNase-seq
  • 3Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 483DNA binding
  • 188Transcription
  • 25DNA accessibility
  • 6DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 289transcription factor
  • 98control
  • 94histone
  • 94histone modification
  • 82recombinant protein
  • 55narrow histone mark
  • 50RNA binding protein
  • 39broad histone mark
  • 13chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 271November, 2017
  • 194May, 2020
  • 59December, 2017
  • 41November, 2018
  • 40August, 2017
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1February, 2020
Available data
  • 602bam
  • 553bigWig
  • 385fastq
  • 378bed narrowPeak
  • 304bigBed narrowPeak
  • 169tsv
  • 86tagAlign
  • 60bed broadPeak
  • 60bigBed broadPeak
  • 10bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 711Homo sapiens
Biosample type
  • 342cell line
  • 340tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 711liver
  • 657connective tissue
  • 651pancreas
  • 465adipose tissue
  • 393heart
  • 367epithelium
  • 354kidney
  • 285brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 43nerve
  • 37embryo
  • 24blood
  • 24bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 711AMP
Genome assembly (visualization)
  • 557hg19
  • 464GRCh38
Lab
  • 640AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 20inconsistent control read length
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

711 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2326911221
tissue
liver13216720311111
right lobe of liver63112
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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