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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 272total RNA-seq
  • 205ChIP-seq
  • 69single cell RNA-seq
  • 57ATAC-seq
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 6DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2WGBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 343Transcription
  • 205DNA binding
  • 76DNA accessibility
  • 93D chromatin structure
  • 4DNA methylation
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 48control
  • 11transcription factor
  • 5RNA binding protein
  • 5nucleotide modification
Date released
  • 150July, 2018
  • 96August, 2017
  • 61May, 2021
  • 56February, 2023
  • 55November, 2019
  • 38October, 2018
  • 34April, 2018
  • 32September, 2018
  • 26February, 2021
  • 18October, 2019
  • 16September, 2020
  • 14March, 2020
  • 10November, 2020
  • 8January, 2021
  • 6July, 2019
  • 6September, 2017
  • 4August, 2021
  • 4June, 2019
  • 4March, 2019
  • 3November, 2018
  • 3October, 2022
  • 2August, 2018
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 491bam
  • 444bigWig
  • 281tsv
  • 256fastq
  • 160bed narrowPeak
  • 59bigBed narrowPeak
  • 27bed bed3+
  • 19tagAlign
  • 17bed broadPeak
  • 7bedpe bed3+
  • 7hic
  • 5bigBed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 643Homo sapiens
Biosample type
  • 367tissue
  • 189primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 711liver
  • 657connective tissue
  • 651pancreas
  • 465adipose tissue
  • 393heart
  • 367epithelium
  • 354kidney
  • 285brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 43nerve
  • 37embryo
  • 24blood
  • 24bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 561AMP
  • 56HPAP
  • 34T1D
Genome assembly (visualization)
  • 473hg19
  • 456GRCh38
Lab
  • 552AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 27Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 81inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

651 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
WGBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans18150638743111
pancreas2164121121
body of pancreas32222
endocrine pancreas16
primary cell
pancreatic alpha cell421391
pancreatic beta cell1113101
pancreatic endocrine cell23
pancreatic ductal cell138
pancreatic acinar cell8101
cell line
EndoC_BH13315196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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