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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1701ChIP-seq
  • 432ATAC-seq
  • 202DNase-seq
  • 63total RNA-seq
  • 56pCHi-C
  • 35snATAC-seq
  • 33Hi-C
  • 23WGBS
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1701DNA binding
  • 674DNA accessibility
  • 66Transcription
  • 45DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1001histone
  • 1001histone modification
  • 506narrow histone mark
  • 494broad histone mark
  • 405transcription factor
  • 296control
  • 93RNA binding protein
  • 89recombinant protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 362November, 2017
  • 294August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 133August, 2021
  • 120May, 2019
  • 110February, 2023
  • 90December, 2017
  • 80April, 2019
  • 59July, 2019
  • 49March, 2020
  • 48November, 2018
  • 41November, 2019
  • 40May, 2024
  • 39October, 2018
  • 33February, 2021
  • 32September, 2018
  • 24February, 2018
  • 21May, 2022
  • 17January, 2019
  • 16January, 2021
  • 16October, 2017
  • 11May, 2023
  • 9April, 2020
  • 8January, 2018
  • 6September, 2017
  • 4March, 2019
  • 3October, 2022
  • 2December, 2018
  • 2November, 2020
  • 1August, 2022
  • 1March, 2023
Available data
  • 1818bam
  • 1649bigWig
  • 1631bed narrowPeak
  • 889bigBed narrowPeak
  • 707fastq
  • 391tagAlign
  • 304bed broadPeak
  • 275bigBed broadPeak
  • 263bed bed3+
  • 111tsv
  • 64xls
  • 31bed bedMethyl
  • 31bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2590Homo sapiens
Biosample type
  • 1347tissue
  • 546primary cell
  • 435cell line
  • 254in vitro differentiated cells
  • 8stem cell
Organ
  • 521liver
  • 290pancreas
  • 264brain
  • 231heart
  • 226kidney
  • 202epithelium
  • 181connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 88musculature of body
  • 85artery
  • 64adipose tissue
  • 42eye
  • 42nerve
  • 24blood
  • 24bodily fluid
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 8spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2393AMP
  • 184T1D
  • 9LungMap
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 1689hg19
  • 1611GRCh38
  • 5hg18
Lab
  • 2148AMP-T2D consortium
  • 255Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 127inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 82missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

2590 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver132201131
islet of Langerhans7148147311
kidney2775136111
heart left ventricle35231141
coronary artery5362
primary cell
monocyte8515211
CD8-positive, alpha-beta T cell33221
naive thymus-derived CD4-positive, alpha-beta T cell2221
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
cell line
HepG23261211
EndoC_BH115191232
GM12878151
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte6781
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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