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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1334total RNA-seq
  • 281single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
Assay category
  • 1633Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 637February, 2021
  • 185August, 2021
  • 182May, 2021
  • 159July, 2018
  • 145May, 2020
  • 94February, 2023
  • 49July, 2019
  • 47September, 2023
  • 42April, 2018
  • 34September, 2020
  • 26October, 2019
  • 25February, 2020
  • 21May, 2022
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 4May, 2023
  • 2August, 2018
  • 2June, 2018
Available data
  • 1343tsv
  • 1196bigWig
  • 1194bam
  • 189fastq
  • 150txt
  • 18zippedFastqFolder
  • 6csv
  • 2bed bed3+
Organism
  • 1737Homo sapiens
Biosample type
  • 1219tissue
  • 261primary cell
  • 138in vitro differentiated cells
  • 119cell line
Organ
  • 475connective tissue
  • 400adipose tissue
  • 353pancreas
  • 190liver
  • 164epithelium
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 9lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1511AMP
  • 110HPAP
  • 60T1D
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 1197hg19
  • 1195GRCh38
Lab
  • 1402AMP-T2D consortium
  • 110Klaus Kaestner, Upenn
  • 64Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
Audit category:
  • 226inconsistent ontology term
  • 9audit script error
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

1737 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans19564
liver16711
kidney4964
bone element84
primary cell
monocyte52
pancreatic alpha cell429
exocrine cell39
pancreatic beta cell1110
Langerhans cell18
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
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