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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 657ChIP-seq
  • 234total RNA-seq
  • 193ATAC-seq
  • 78single cell RNA-seq
  • 49pCHi-C
  • 46DNase-seq
  • 19RRBS
  • 18Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
  • 1WGBS
Assay category
  • 657DNA binding
  • 323Transcription
  • 255DNA accessibility
  • 21DNA methylation
  • 183D chromatin structure
Target of assay
  • 333transcription factor
  • 259histone
  • 259histone modification
  • 151narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 71RNA binding protein
  • 71control
  • 21chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 251November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 53August, 2017
  • 53February, 2023
  • 48March, 2020
  • 42November, 2018
  • 37February, 2021
  • 36July, 2018
  • 32April, 2018
  • 25February, 2020
  • 24November, 2019
  • 14May, 2019
  • 10November, 2020
  • 8January, 2019
  • 8October, 2018
  • 7December, 2019
  • 6October, 2017
  • 5January, 2021
  • 4March, 2019
  • 3October, 2022
  • 2April, 2019
  • 2August, 2018
  • 2December, 2018
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1March, 2023
Available data
  • 1033bam
  • 958bigWig
  • 633bed narrowPeak
  • 495fastq
  • 434bigBed narrowPeak
  • 342tsv
  • 142tagAlign
  • 120bed broadPeak
  • 120bigBed broadPeak
  • 106bed bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
Organism
  • 1344Homo sapiens
Biosample type
  • 451primary cell
  • 359cell line
  • 348tissue
  • 182in vitro differentiated cells
  • 4stem cell
Organ
  • 366liver
  • 180pancreas
  • 152epithelium
  • 96brain
  • 67connective tissue
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13blood
  • 13bodily fluid
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1179AMP
  • 161T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 1039hg19
  • 887GRCh38
Lab
  • 1134AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 134inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 19missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1344 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
WGBS
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast14111
cell line
HepG2283122
EndoC_BH122263
Panc11111
GM1287811
H1-hESC8
tissue
islet of Langerhans22835611234
liver423111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte7181
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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