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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 476ChIP-seq
  • 90ATAC-seq
  • 46total RNA-seq
  • 21pCHi-C
  • 20DNase-seq
  • 19RRBS
  • 9Hi-C
  • 7snATAC-seq
  • 6MeRIP-seq
  • 5single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 476DNA binding
  • 118DNA accessibility
  • 51Transcription
  • 20DNA methylation
  • 93D chromatin structure
Target of assay
  • 300transcription factor
  • 126histone
  • 126histone modification
  • 88recombinant protein
  • 65broad histone mark
  • 62RNA binding protein
  • 61narrow histone mark
  • 54control
  • 21chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 251November, 2017
  • 74October, 2019
  • 59December, 2017
  • 56May, 2020
  • 41November, 2018
  • 32June, 2019
  • 26February, 2021
  • 24July, 2019
  • 23November, 2019
  • 20August, 2017
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 8January, 2019
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 2December, 2018
  • 1April, 2019
Available data
  • 569bam
  • 510bigWig
  • 461bed narrowPeak
  • 395bigBed narrowPeak
  • 387fastq
  • 97bed broadPeak
  • 97bigBed broadPeak
  • 57tsv
  • 39bed bed3+
  • 26tagAlign
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 708Homo sapiens
Biosample type
  • 359cell line
  • 165primary cell
  • 111tissue
  • 70in vitro differentiated cells
  • 3stem cell
Organ
  • 351liver
  • 82epithelium
  • 57pancreas
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11blood
  • 11bodily fluid
  • 11embryo
  • 10connective tissue
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 685AMP
  • 23T1D
Genome assembly (visualization)
  • 564hg19
  • 479GRCh38
Lab
  • 670AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

708 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
WGBS
cell line
HepG2283122
EndoC_BH122263
Panc11111
GM1287811
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
skeletal muscle myoblast14111
macrophage11
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
stem cell
hESC3
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