Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
Assay category
  • 93DNA binding
Target of assay
  • 1007histone
  • 1007histone modification
  • 508narrow histone mark
  • 498broad histone mark
  • 405transcription factor
  • 302control
  • 93RNA binding protein
  • 89recombinant protein
  • 25chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 31November, 2017
  • 19November, 2018
  • 8August, 2017
  • 5January, 2019
  • 5May, 2019
  • 5May, 2021
  • 5May, 2024
  • 4April, 2019
  • 4June, 2019
  • 3December, 2017
  • 2October, 2018
  • 1August, 2021
  • 1November, 2019
Available data
  • 85bigWig
  • 84bed narrowPeak
  • 82bam
  • 72bigBed narrowPeak
  • 68fastq
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 2bed bed3+
  • 1tar
Organism
  • 93Homo sapiens
Biosample type
  • 54cell line
  • 18tissue
  • 11in vitro differentiated cells
  • 10primary cell
Organ
  • 50liver
  • 11heart
  • 8epithelium
  • 6blood
  • 6bodily fluid
  • 5connective tissue
  • 5pancreas
  • 5vasculature
  • 4blood vessel
  • 3brain
  • 3kidney
  • 1artery
  • 1eye
Project
  • 93AMP
Genome assembly (visualization)
  • 80GRCh38
  • 79hg19
Lab
  • 82AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 5Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 3inconsistent control read length
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

93 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG247
GM128786
EndoC_BH11
tissue
left cardiac atrium5
heart left ventricle3
islet of Langerhans2
ascending aorta1
body of pancreas1
in vitro differentiated cells
embryonic stem cell5
adipocyte4
hepatocyte2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego