Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 405ChIP-seq
Assay category
  • 405DNA binding
Target of assay
  • 1007histone
  • 1007histone modification
  • 508narrow histone mark
  • 498broad histone mark
  • 405transcription factor
  • 302control
  • 93RNA binding protein
  • 89recombinant protein
  • 25chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 206November, 2017
  • 46August, 2017
  • 43November, 2018
  • 40December, 2017
  • 16May, 2021
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 6January, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 2December, 2018
  • 2October, 2018
  • 1November, 2019
Available data
  • 387bigWig
  • 376bam
  • 360bed narrowPeak
  • 345fastq
  • 297bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 405Homo sapiens
Biosample type
  • 274cell line
  • 72tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 289liver
  • 35connective tissue
  • 17heart
  • 12adipose tissue
  • 11pancreas
  • 10blood
  • 10bodily fluid
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 405AMP
Genome assembly (visualization)
  • 378hg19
  • 341GRCh38
Lab
  • 377AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 18inconsistent control read length
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

405 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2251
GM1287810
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver36
white adipose tissue12
islet of Langerhans7
heart left ventricle5
left cardiac atrium5
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego