Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
58
ChIP-seq
6
ATAC-seq
3
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
58
DNA binding
8
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
22
control
20
broad histone mark
11
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
40
August, 2017
22
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
410
bigWig
401
tsv
26
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
470
tissue
2
primary cell
1
in vitro differentiated cells
Organ
689
pancreas
610
connective tissue
473
adipose tissue
405
liver
393
heart
354
kidney
343
epithelium
266
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
10
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
473
AMP
Genome assembly (visualization)
413
hg19
409
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.run_type!
single-ended
BIOSAMPLE
ASSAY
473 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
10
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download