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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 58ChIP-seq
  • 6ATAC-seq
  • 3WGBS
  • 3small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 58DNA binding
  • 8DNA accessibility
  • 3DNA methylation
Target of assay
  • 31histone
  • 31histone modification
  • 22control
  • 20broad histone mark
  • 11narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 386February, 2021
  • 40August, 2017
  • 22October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 425bam
  • 410bigWig
  • 401tsv
  • 26fastq
  • 12bed narrowPeak
  • 9bigBed narrowPeak
  • 8tagAlign
  • 3bed broadPeak
  • 2bed bed3+
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 472Homo sapiens
Biosample type
  • 470tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 689pancreas
  • 610connective tissue
  • 473adipose tissue
  • 405liver
  • 393heart
  • 354kidney
  • 343epithelium
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 473AMP
Genome assembly (visualization)
  • 413hg19
  • 409GRCh38
Lab
  • 473AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

473 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue38231
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad510112
visceral abdominal adipose tissue3
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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