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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 85ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 5pCHi-C
  • 3WGBS
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
  • 1single cell RNA-seq
Assay category
  • 478Transcription
  • 85DNA binding
  • 34DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 52histone
  • 52histone modification
  • 32broad histone mark
  • 27control
  • 20narrow histone mark
  • 6RNA binding protein
  • 6transcription factor
Date released
  • 455February, 2021
  • 55August, 2017
  • 22October, 2018
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2February, 2020
  • 2March, 2020
  • 2May, 2021
  • 1April, 2018
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 520bam
  • 505bigWig
  • 475tsv
  • 32bed narrowPeak
  • 27bigBed narrowPeak
  • 27fastq
  • 22tagAlign
  • 16bed bed3+
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 609Homo sapiens
Biosample type
  • 529tissue
  • 44in vitro differentiated cells
  • 36primary cell
  • 1stem cell
Organ
  • 689pancreas
  • 610connective tissue
  • 473adipose tissue
  • 405liver
  • 393heart
  • 354kidney
  • 343epithelium
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 609AMP
  • 1T1D
Genome assembly (visualization)
  • 525hg19
  • 500GRCh38
Lab
  • 605AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

610 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
single cell RNA-seq
tissue
adipose tissue38231
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad510121
in vitro differentiated cells
adipocyte514811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
brain pericyte11
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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