Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 103ATAC-seq
  • 78total RNA-seq
  • 57ChIP-seq
  • 47WGBS
  • 19DNase-seq
  • 14single cell RNA-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 123DNA accessibility
  • 92Transcription
  • 57DNA binding
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 42histone
  • 42histone modification
  • 21broad histone mark
  • 21narrow histone mark
  • 13control
  • 5transcription factor
  • 4RNA binding protein
  • 3nucleotide modification
Date released
  • 80May, 2022
  • 40September, 2018
  • 35October, 2019
  • 32February, 2021
  • 26May, 2021
  • 20June, 2019
  • 16November, 2019
  • 15February, 2023
  • 13July, 2019
  • 9April, 2018
  • 7August, 2020
  • 6August, 2021
  • 6December, 2019
  • 6March, 2020
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 4July, 2018
  • 3August, 2017
  • 3October, 2022
  • 3September, 2020
  • 2October, 2018
  • 1August, 2018
Available data
  • 189bam
  • 188bigWig
  • 100tsv
  • 96bed narrowPeak
  • 80zippedFastqFolder
  • 76fastq
  • 58bigBed narrowPeak
  • 21bed bed3+
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 342Homo sapiens
Biosample type
  • 244primary cell
  • 79cell line
  • 15tissue
  • 5in vitro differentiated cells
Organ
  • 689pancreas
  • 610connective tissue
  • 473adipose tissue
  • 405liver
  • 393heart
  • 354kidney
  • 343epithelium
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 240AMP
  • 99HPAP
  • 4T1D
Genome assembly (visualization)
  • 198hg19
  • 183GRCh38
Lab
  • 238AMP-T2D consortium
  • 99Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 86inconsistent ontology term
  • 5audit script error
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

343 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell35103121
pancreatic beta cell23101621
endothelial cell of umbilical vein17221
pancreatic acinar cell9451
epithelial cell of proximal tubule11011
cell line
EndoC_BH11933151621
glomerular visceral epithelial cell11
tissue
pigmented layer of retina122
renal glomerulus1
in vitro differentiated cells
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego