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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
168
ChIP-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
168
DNA binding
29
DNA accessibility
5
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
66
histone modification
65
histone
60
transcription factor
45
narrow histone mark
41
control
20
broad histone mark
10
chromatin remodeller
9
RNA binding protein
Date released
194
May, 2020
43
November, 2017
40
August, 2017
40
May, 2022
35
August, 2021
12
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
December, 2017
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
298
bam
297
bigWig
174
tsv
135
bed narrowPeak
79
fastq
74
tagAlign
55
bigBed narrowPeak
10
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
405
Homo sapiens
Biosample type
299
tissue
92
cell line
14
primary cell
Organ
689
pancreas
610
connective tissue
473
adipose tissue
405
liver
393
heart
354
kidney
343
epithelium
266
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
10
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
405
AMP
Genome assembly (visualization)
302
hg19
254
GRCh38
Lab
334
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
8
inconsistent control run_type
7
inconsistent control read length
files.run_type!
single-ended
BIOSAMPLE
ASSAY
405 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
91
20
2
1
2
1
1
1
right lobe of liver
3
4
1
2
1
2
cell line
HepG2
14
69
1
2
1
2
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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