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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 6total RNA-seq
  • 3RRBS
  • 2small RNA-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 39DNA binding
  • 35DNA accessibility
  • 9Transcription
  • 63D chromatin structure
  • 4DNA methylation
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 24August, 2017
  • 10July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1txt
Organism
  • 94Homo sapiens
Biosample type
  • 80tissue
  • 14primary cell
Organ
  • 689pancreas
  • 610connective tissue
  • 473adipose tissue
  • 405liver
  • 393heart
  • 354kidney
  • 343epithelium
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 94AMP
Genome assembly (visualization)
  • 71hg19
  • 53GRCh38
Lab
  • 94AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

94 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue22121111
muscle of leg7131
muscle of arm17
gastrocnemius medialis41
psoas muscle221
forelimb muscle1
hindlimb muscle1
left ventricle myocardium1
primary cell
skeletal muscle satellite cell811
skeletal muscle cell211
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